Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
☆14Dec 24, 2023Updated 2 years ago
Alternatives and similar repositories for trisicell
Users that are interested in trisicell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Introduction to Python3☆11Oct 26, 2020Updated 6 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 6 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 5 years ago
- মেশিন লার্নিং: হাতে কলমে 'টাইটানিক 'প্রজেক্ট ওয়ার্কবুক☆10Jul 2, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tutorials contain live coding and script for R programming in Bangla☆17Oct 4, 2019Updated 7 years ago
- ☆12Nov 23, 2023Updated 2 years ago
- Find your current location using FusedLocationProviderClient☆15Nov 15, 2017Updated 8 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 10 months ago
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- Curriculum for DevFest 2017 at Columbia University☆14Dec 24, 2022Updated 3 years ago
- Git repo for CONIPHER tree building☆28Oct 22, 2026Updated 2 weeks ago
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Nov 11, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 7 months ago
- ☆16Jun 22, 2022Updated 4 years ago
- Class notes for the Machine Learning Nanodegree at Udacity☆17Jul 11, 2017Updated 9 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆15May 8, 2020Updated 6 years ago
- Android App for Noakhali Science And Technology University☆15Nov 26, 2020Updated 5 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Oct 29, 2026Updated last week
- CIPHER: Covariance Inference for Perturbation and High-dimensional Expression Response☆13Oct 5, 2026Updated last month
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- ☆19May 27, 2025Updated last year
- Toolkit for single-cell copy number analysis☆37Dec 15, 2025Updated 10 months ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- As Code Coopers Training (previously known as Virtual Tech Academy), we have launched a LMS for our students. We are open sourcing those …☆24Feb 11, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lesson for the shell for genomics☆11Jan 12, 2021Updated 5 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆16Nov 7, 2024Updated 2 years ago
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 4 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- ☆10Aug 18, 2024Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆45Aug 21, 2025Updated last year