Alternatives and similar repositories for Hist2Cell

Users that are interested in Hist2Cell are comparing it to the libraries listed below

• daviddaiweizhang / istar
  ☆154Updated last year
• almaan / her2st
  Her2 Breast Cancer Project
  ☆90Updated 3 years ago
• SydneyBioX / GHIST
  ☆56Updated 3 months ago
• GuangyuWangLab2021 / Loki
  A visual–omics foundation model to bridge histopathology with spatial transcriptomics
  ☆115Updated 6 months ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆32Updated 8 months ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆136Updated 4 years ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆37Updated 3 years ago
• biomed-AI / Hist2ST
  ☆51Updated 3 years ago
• AI4SCR / ATHENA
  ☆35Updated last week
• ratschlab / HistoPlexer
  ☆25Updated 8 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆171Updated last week
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆82Updated last year
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• ruitian-olivia / IGI-DL
  Code for ST_IGI package
  ☆34Updated 5 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 6 months ago
• JinmiaoChenLab / SEDR
  ☆64Updated last year
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆63Updated last year
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆46Updated 4 years ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• snap-stanford / stellar
  ☆70Updated 2 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆88Updated 2 weeks ago
• gerstung-lab / PC-CHiP
  Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
  ☆77Updated 5 years ago
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆44Updated 6 months ago
• kpcoleman / miso
  ☆32Updated 11 months ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆109Updated 3 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• loicchadoutaud / sCellST
  ☆13Updated last month