Codebase for training the SubCell models
☆24Aug 3, 2026Updated last week
Alternatives and similar repositories for subcell-embed
Users that are interested in subcell-embed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jul 29, 2026Updated last week
- Group-wise release of ProtiCelli, including core code deveplopment.☆24Jun 12, 2026Updated last month
- Fairness in single-cell data☆21Mar 25, 2026Updated 4 months ago
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆41Sep 3, 2025Updated 11 months ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆19Oct 9, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆38Dec 18, 2025Updated 7 months ago
- ☆31Jan 22, 2025Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆25Jun 15, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆27Aug 3, 2026Updated last week
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers☆146Nov 24, 2025Updated 8 months ago
- Morphological features from images and masks made easy.☆48Jul 7, 2026Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Updated this week
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆20Oct 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 11 months ago
- ☆15Mar 8, 2026Updated 5 months ago
- Hosted version of cellxgene☆21Updated this week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆67Apr 23, 2026Updated 3 months ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 10 months ago
- ☆36Apr 15, 2025Updated last year
- Stochastic trace estimation using JAX☆20Jun 29, 2026Updated last month
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 11 months ago
- ☆17May 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆34Mar 20, 2026Updated 4 months ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆18Aug 9, 2025Updated last year
- ☆17Updated this week
- Single-Cell (Perturbation) Model Library☆125Jul 27, 2026Updated 2 weeks ago
- comseg☆24Feb 6, 2025Updated last year
- ☆17May 22, 2025Updated last year
- ☆157Nov 6, 2025Updated 9 months ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 5 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆19Nov 25, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- AetherCell is a hierarchical generative framework designed to predict context-specific transcriptomic responses to drugs and genetic pert…☆20Jul 22, 2026Updated 2 weeks ago
- scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction (ICLR 2026)☆44Apr 22, 2026Updated 3 months ago
- Multigrate: multiomic data integration for single-cell genomics☆34Aug 3, 2026Updated last week
- pytorch dataloaders for single-cell perturbation data☆49Jul 18, 2026Updated 3 weeks ago
- Find profile pairs and compute retrieval metrics between them.☆23Aug 1, 2026Updated last week
- ☆12Oct 10, 2024Updated last year
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago