KlausVigo / ggnetworx
phylogenetic networks using ggplot2 and ggtree
☆13Updated 2 months ago
Alternatives and similar repositories for ggnetworx:
Users that are interested in ggnetworx are comparing it to the libraries listed below
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆17Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 7 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last week
- ☆19Updated last year
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆15Updated last month
- Using ggtree to Visualize Data on Tree-Like Structure☆24Updated 5 years ago
- R/Shiny application for viewing microbial community data☆19Updated 4 years ago
- ☆18Updated 9 years ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆28Updated last week
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆14Updated last year
- Computable build reports, package metadata, and download stats from the Bioconductor project☆21Updated last week
- Computes affinity between two entities based on their co-occurrence☆26Updated last year
- ☆9Updated 2 years ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated 2 years ago
- R/Package Version Check☆23Updated 3 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆17Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- K-mer Counting for Biological Sequence Analysis☆27Updated 5 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 3 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 10 months ago
- Easy to define segments in y-axis for 'ggplot2'.☆28Updated 5 years ago
- Fast alignment-free pangenome creation and exploration☆27Updated 4 years ago
- a take on ordination plots using ggplot2☆63Updated 7 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 11 months ago
- R package to estimate kinship and FST from SNP data☆20Updated 5 months ago
- ☆17Updated 3 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated this week
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- An interactive web application for demonstrating and using phyloseq.☆60Updated 5 years ago