KlausVigo / ggnetworx
phylogenetic networks using ggplot2 and ggtree
☆11Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for ggnetworx
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 4 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆14Updated 5 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆17Updated 9 months ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆17Updated 11 months ago
- ☆14Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 4 months ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- phylogenetic networks using ggplot2 and ggtree☆11Updated 2 years ago
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last year
- babette is an R package to work with BEAST2☆44Updated 4 months ago
- A book for teaching people how to do comparative methods in R☆20Updated last year
- population genetic simulations with R and Shiny☆27Updated 2 weeks ago
- A model-based visualization method for microbiome data☆16Updated last year
- R package to run BEAST2☆11Updated 2 weeks ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆17Updated 8 months ago
- ☆11Updated last year
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆14Updated 8 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- Using ggtree to Visualize Data on Tree-Like Structure☆23Updated 4 years ago
- R/Shiny application for viewing microbial community data☆19Updated 3 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆12Updated 7 months ago
- Phylogenetic tools for Eco-phylogenetics☆11Updated last month
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 4 months ago
- Ordination lectures for Ecological Methods in Oulu☆18Updated 3 months ago
- A template for creating modular shiny applications that meet academic standards and are reproducible☆17Updated last week
- Phylogenetic ANalyses of DiversificAtion☆24Updated 4 months ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆27Updated 7 months ago
- A suite of methods and models for studying evolutionary radiations☆22Updated last year
- The phruta R package☆9Updated 4 months ago