DuttonLab / kvasirLinks
Searching for Horizontal Gene Transfer
☆10Updated 5 years ago
Alternatives and similar repositories for kvasir
Users that are interested in kvasir are comparing it to the libraries listed below
Sorting:
- Intra-species bacterial contamination detection☆25Updated this week
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- MAG Circularization Method☆32Updated 3 months ago
- IslandPath standalone software☆35Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- Recombination-free trees☆63Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Discover and annotate the virome☆58Updated last week
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 2 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- plasmidVerify: plasmid contig verification tool☆15Updated 5 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated last week
- Predict plasmids from uncorrected long read data☆41Updated 3 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- Order and orientation of complete bacterial genomes☆29Updated 6 months ago
- Gene Absence Presence Identification tool.☆27Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- ☆38Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago