DuttonLab / kvasirLinks
Searching for Horizontal Gene Transfer
☆10Updated 5 years ago
Alternatives and similar repositories for kvasir
Users that are interested in kvasir are comparing it to the libraries listed below
Sorting:
- ☆28Updated 8 months ago
- KEGG Module Evaluation Tool☆31Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 11 months ago
- Discover and annotate the virome☆53Updated this week
- MAG Circularization Method☆32Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated 2 weeks ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆54Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Bacterial GWAS analysis☆44Updated 2 months ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆45Updated 2 years ago
- ☆26Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 7 months ago
- ☆13Updated 8 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago