DuttonLab / kvasirLinks
Searching for Horizontal Gene Transfer
☆10Updated 5 years ago
Alternatives and similar repositories for kvasir
Users that are interested in kvasir are comparing it to the libraries listed below
Sorting:
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated last week
- Intra-species bacterial contamination detection☆25Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- MAG Circularization Method☆32Updated 2 months ago
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- ☆22Updated 2 years ago
- Prophage Activity Estimator☆30Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- ☆18Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- ☆45Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- ☆26Updated 2 years ago
- ☆16Updated 8 months ago
- Bacterial taxonomy construction and evaluation in R☆15Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- ☆13Updated 8 years ago
- ☆20Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month