Python-based pipeline for analyzing Nanopore sequencing metabarcoding data
☆18Jun 28, 2021Updated 5 years ago
Alternatives and similar repositories for ASHURE
Users that are interested in ASHURE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated 2 years ago
- eDNA metabarcoding pipeline☆49Sep 10, 2026Updated last month
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 5 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Curso de introducción a la bioinformática e investigación reproducible☆36Sep 30, 2026Updated last week
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 6 years ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- ☆15Apr 1, 2024Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆118Nov 20, 2023Updated 2 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 9 years ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 27, 2026Updated 4 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- Deploy Machine Learning Pipeline on AWS Fargate☆13Dec 8, 2022Updated 3 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆52Sep 24, 2025Updated last year
- Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data☆20Jul 14, 2026Updated 2 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- iSDM is an open-source R package that implements a few functions useful for modeling the spatial distribution of invasive species☆17Jan 12, 2023Updated 3 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 6 months ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- ☆17Nov 5, 2022Updated 3 years ago
- ☆21Updated this week
- ☆20May 22, 2023Updated 3 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Taller práctico de bioinformática Posgrado en Ciencias Biológicas UNAM☆20Jan 28, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Aug 18, 2026Updated last month
- One stop MIP design and analysis☆25Sep 30, 2020Updated 6 years ago
- Look Up Guild Information for Fungi in R☆26Aug 14, 2026Updated last month
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆68Oct 3, 2026Updated last week
- Suite of tools for pangenomics built using vg☆25Updated this week
- ☆10Dec 28, 2023Updated 2 years ago