Python-based pipeline for analyzing Nanopore sequencing metabarcoding data
☆18Jun 28, 2021Updated 4 years ago
Alternatives and similar repositories for ASHURE
Users that are interested in ASHURE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 6 months ago
- eDNA metabarcoding pipeline☆47Mar 11, 2026Updated 3 months ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Curso de introducción a la bioinformática e investigación reproducible☆34Jan 2, 2026Updated 5 months ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 27, 2026Updated 2 weeks ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- Deploy Machine Learning Pipeline on AWS Fargate☆13Dec 8, 2022Updated 3 years ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data☆20May 5, 2026Updated last month
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆24Feb 23, 2026Updated 3 months ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- Get started using the vegan package for R for multivariate data analysis and community ecology☆41Jul 8, 2020Updated 5 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Nov 8, 2024Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 2 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆52Sep 24, 2025Updated 8 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- One stop MIP design and analysis☆24Sep 30, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- iSDM is an open-source R package that implements a few functions useful for modeling the spatial distribution of invasive species☆17Jan 12, 2023Updated 3 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 3 months ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- ☆21Updated this week
- ☆19May 13, 2026Updated 3 weeks ago