Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
☆173Dec 26, 2023Updated 2 years ago
Alternatives and similar repositories for Clairvoyante
Users that are interested in Clairvoyante are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆176Dec 23, 2021Updated 4 years ago
- Structural variation caller using third generation sequencing☆649Apr 2, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- Structural Variants Pipeline for Long Reads☆44Jul 17, 2018Updated 7 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- ☆84Mar 3, 2025Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated 2 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,685Mar 19, 2026Updated last month
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 5 years ago
- diploid SNV caller for error-prone reads☆208Apr 26, 2024Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆355Apr 17, 2026Updated last week
- Python and C++ code for reading and writing genomics data.☆798Dec 9, 2021Updated 4 years ago
- ☆287Dec 29, 2025Updated 4 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference☆60Apr 27, 2018Updated 8 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Apr 16, 2018Updated 8 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year