Python bindings to minimap2
☆16Sep 18, 2017Updated 8 years ago
Alternatives and similar repositories for minimappy
Users that are interested in minimappy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 23, 2020Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Fast5 API provided by ONT Research☆21Mar 17, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Sep 27, 2018Updated 7 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- ☆13Nov 26, 2025Updated 4 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated last year
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Apr 16, 2018Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 8 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- PHYLIP package starting with version 4.0a☆19Mar 25, 2026Updated 2 weeks ago