nanoporetech / minimappyLinks
Python bindings to minimap2
☆16Updated 7 years ago
Alternatives and similar repositories for minimappy
Users that are interested in minimappy are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- ☆28Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆26Updated last year
- GBWT-based handle graph☆31Updated 3 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- reference free variant assembly☆33Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Variant call adjudication☆16Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- drunk on perbase pileups and lua expressions☆19Updated last month
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆14Updated last year
- ☆32Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago