nanoporetech / minimappyLinks
Python bindings to minimap2
☆16Updated 7 years ago
Alternatives and similar repositories for minimappy
Users that are interested in minimappy are comparing it to the libraries listed below
Sorting:
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- reference free variant assembly☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 3 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Find Unique genomic Regions☆30Updated this week
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 3 weeks ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- GBWT-based handle graph☆31Updated last month
- ☆28Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago