hym0405 / CAMII
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CAMII
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- Analyses in R and Python Using curatedMetagenomicData☆24Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆15Updated last year
- ☆25Updated 2 months ago
- my bin directory☆44Updated 2 weeks ago
- gutSMASH☆52Updated last month
- ☆21Updated 4 years ago
- ☆30Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆29Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated last month
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆29Updated last year
- A microbiome analysis toolkit for R☆21Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 2 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆26Updated 2 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Documentation for Evolview☆26Updated 2 years ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- A program for detection of tRNA genes☆56Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- This is the supplementary code for CRC-multi-kingdom☆16Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- ☆57Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- ☆17Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆24Updated 5 years ago
- Code for running the analysis in our universe of genes project☆8Updated 5 years ago
- Some useful python scripts for biologists☆32Updated this week