Alternatives and similar repositories for CAMII

Users that are interested in CAMII are comparing it to the libraries listed below

• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last month
• campanam / BaitsTools
  Software for hybridization capture bait design
  ☆11Updated last year
• isabelschober / proteinortho_curves
  Draw pan- and core-genome curves from proteinortho output
  ☆10Updated 2 years ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆32Updated 3 years ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆31Updated last year
• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 4 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 6 months ago
• SilentGene / Bio-py
  Some useful python scripts for biologists
  ☆32Updated last year
• guokai8 / bioAnno
  Build Annotation package by using information from KEGG, NCBI, Ensembl
  ☆15Updated 2 years ago
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• StewartLab / Stewart_TEDDY_Microbiome_Analysis
  Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study
  ☆10Updated 7 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 4 months ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last week
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 4 years ago
• EnvGen / DEGEPRIME
  A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
  ☆32Updated 2 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 5 years ago
• BorgwardtLab / networkGWAS
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆16Updated 2 years ago
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆16Updated 4 years ago
• hzaurzli / MicroWorldOmics
  ☆15Updated 4 months ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆39Updated 3 years ago
• btjaden / Rockhopper
  For computational analysis of bacterial RNA-seq data
  ☆12Updated 8 years ago
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆29Updated 3 years ago
• zjshi / snv_analysis_almeida2019
  ☆21Updated 5 years ago
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆18Updated last year
• z0on / tag-based_RNAseq
  Cost-efficient genome-wide gene expression profiling
  ☆16Updated 3 years ago
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆36Updated 2 years ago
• djhshih / blat
  BLAST-Like Alignment Tool
  ☆22Updated 7 years ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆28Updated last year