GuillemSalazar / EcolUtils

Related projects ⓘ

Alternatives and complementary repositories for EcolUtils

• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆13Updated last year
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆41Updated 2 years ago
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆17Updated 5 months ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆28Updated this week
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 6 months ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 2 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆18Updated last year
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆9Updated 2 years ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 6 years ago
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆14Updated last year
• rogotoh / PMiFish
  ☆11Updated 9 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last year
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 5 years ago
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆21Updated last year
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated last year
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 9 years ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆9Updated 6 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆26Updated 4 months ago
• DaliangNing / NST
  Normalized Stochasticity Ratio in community assembly
  ☆25Updated last month
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆63Updated 11 months ago
• mahsa-mousavi / eDNAFlow
  ☆20Updated last year
• ukaraoz / microtrait
  ☆29Updated 8 months ago
• mirnavazquez / RbiMs
  R tools for reconstructing metabolisms.
  ☆14Updated this week
• terrimporter / CO1Classifier
  This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…
  ☆31Updated last year
• MadsAlbertsen / ampvis
  [deprecated] Please use ampvis2
  ☆8Updated 7 years ago
• enormandeau / barque
  eDNA metabarcoding pipeline
  ☆30Updated 2 months ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated 3 months ago
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆28Updated this week