Utilities for community ecology analysis
☆20Oct 2, 2020Updated 5 years ago
Alternatives and similar repositories for EcolUtils
Users that are interested in EcolUtils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jun 1, 2021Updated 4 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- ☆21Nov 13, 2019Updated 6 years ago
- ☆11Aug 26, 2022Updated 3 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- ☆17May 13, 2025Updated 11 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fractionation estimation in R package☆10Apr 12, 2020Updated 6 years ago
- ☆58Dec 30, 2020Updated 5 years ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- SparCC is a Python module for calculating correlations in compositional data☆34May 22, 2024Updated last year
- Build similarity network from items with associated tags (for example documents with keywords)☆16Feb 16, 2023Updated 3 years ago
- A Computation of Functional Spaces and Functional Diversity Indices☆30Dec 19, 2024Updated last year
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 5 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Apr 6, 2026Updated last week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated last month
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- rdacca.hp: an R package for hierarchical and variation partitioning in multiple regression and canonical analysis☆22Feb 22, 2025Updated last year
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 9 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 3 years ago
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆15Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 5 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated 2 months ago
- ☆19Jun 12, 2025Updated 10 months ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆52Dec 9, 2021Updated 4 years ago
- eDNA metabarcoding pipeline☆45Mar 11, 2026Updated last month
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- R dismo package☆34Nov 25, 2024Updated last year