kmhernan / awesome-bioinformatics-formatsLinks
Curated list of bioinformatics formats and publications
☆54Updated 6 years ago
Alternatives and similar repositories for awesome-bioinformatics-formats
Users that are interested in awesome-bioinformatics-formats are comparing it to the libraries listed below
Sorting:
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- FusionInspector code☆58Updated last month
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 3 months ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- Reference genome resource manager☆74Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆53Updated 5 years ago
- An interactive web-tool for RNA-seq analysis☆69Updated 7 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- List of computational resources for analyzing microbial sequencing data.☆67Updated 4 months ago
- ☆73Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 4 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Learning the Sequence Alignment/Map format☆113Updated 2 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆124Updated 5 months ago
- ☆82Updated 3 years ago
- BigWig and BAM utilities☆97Updated last year
- Cancer Predisposition Sequencing Reporter (CPSR)☆62Updated last month
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- ☆50Updated 4 years ago