Curated list of bioinformatics formats and publications
☆54Mar 18, 2019Updated 7 years ago
Alternatives and similar repositories for awesome-bioinformatics-formats
Users that are interested in awesome-bioinformatics-formats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- ☆10Apr 28, 2019Updated 7 years ago
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- dotfiles, batteries included☆22Aug 31, 2026Updated last month
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- ggDoubleHeat: A heatmap-like visualization tool☆16Sep 21, 2026Updated 3 weeks ago
- ☆12Feb 19, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 5 years ago
- Thousand Variant Callers Project Repository☆75Oct 17, 2019Updated 6 years ago
- A collection of reusable WDL tasks. Category:Other☆88Sep 29, 2026Updated 2 weeks ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 9 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- nim wrapper for htslib for parsing genomics data files☆159Sep 30, 2026Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Examples of great academic lab expectations, manuals, policies for joining and being in the lab☆51Jul 25, 2019Updated 7 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog …☆13Oct 1, 2026Updated last week
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 6 months ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆24Sep 2, 2026Updated last month
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 6 years ago
- MView extracts and reformats the results of a sequence database search or multiple alignment.☆32Sep 8, 2024Updated 2 years ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13Aug 11, 2026Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆15May 2, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 6 months ago
- Ceto is an NGS analysis system put together in a collaboration between the Bartom computational Lab, the Shilatifard lab, and other scien…☆25Oct 10, 2022Updated 4 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 8 months ago
- A python package and a set of shell commands to handle GTF files☆52Jan 20, 2026Updated 8 months ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 8 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago