biowdl / tasks
A collection of reusable WDL tasks. Category:Other
☆86Updated this week
Alternatives and similar repositories for tasks:
Users that are interested in tasks are comparing it to the libraries listed below
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- ABRA2☆92Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆183Updated this week
- Testing building mulled containers for multi-requirement tools.☆71Updated this week
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆82Updated last month
- ☆119Updated 4 months ago
- ☆82Updated 6 years ago
- VarDict☆194Updated last year
- Annotation and Ranking of Structural Variation☆248Updated 2 weeks ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- CLI for interacting with Cromwell servers☆53Updated 11 months ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆158Updated 7 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Gene fusion detection and visualization☆122Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Demultiplexing pipeline for sequencing data☆45Updated 2 weeks ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆62Updated this week
- A tool for profiling long STRs from short reads☆96Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week