Alternatives and similar repositories for pygenomics

Users that are interested in pygenomics are comparing it to the libraries listed below

• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• tiagoantao / genomics-notebooks
  IPython notebooks to teach Genomics and Population Genetics
  ☆21Updated 8 years ago
• opencb / hpg-pore
  Nanopore desc
  ☆18Updated 9 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• sejmodha / MetaViC
  Virus metagenomic pipeline for unknown host or in absence of a host genome
  ☆18Updated 5 years ago
• chanzuckerberg / czid-dag
  Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
  ☆27Updated 3 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 10 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 8 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆34Updated 3 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated 2 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 8 months ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 8 months ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• lotharwissler / bioinformatics
  ☆10Updated 12 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆43Updated 4 years ago
• MonashBioinformaticsPlatform / RNAsik-pipe
  RNAsik - more than just a pipeline
  ☆13Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 3 weeks ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆40Updated 6 months ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆39Updated 11 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 4 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago