lcdb / lcdb-wf
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
☆23Updated last month
Alternatives and similar repositories for lcdb-wf:
Users that are interested in lcdb-wf are comparing it to the libraries listed below
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- ☆23Updated 6 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ☆47Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A python package and a set of shell commands to handle GTF files☆48Updated 10 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆36Updated last month
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- RNAseq pipeline based on snakemake