lcdb / lcdb-wf
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
☆22Updated last week
Alternatives and similar repositories for lcdb-wf:
Users that are interested in lcdb-wf are comparing it to the libraries listed below
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆15Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 3 months ago
- Python package to annotate and visualize gene fusions.☆61Updated 6 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆27Updated this week
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- ☆15Updated 2 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated 2 years ago
- ☆18Updated 4 years ago
- Master of Pores 2☆23Updated 4 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Python package to analyze DNA methylation data☆41Updated 4 months ago
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year