itmat / NormalizationLinks
RNA-Seq normalization and quantification pipeline
☆12Updated last year
Alternatives and similar repositories for Normalization
Users that are interested in Normalization are comparing it to the libraries listed below
Sorting:
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆19Updated 7 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- interactive plots for differential expression analysis☆34Updated 5 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Mapped QC analysis program☆44Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated this week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 8 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Analysis for svaseq paper☆20Updated 11 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A tool to assess the quality and distribution of genomic data☆17Updated 4 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 8 months ago