Alternatives and similar repositories for PopGenR

Users that are interested in PopGenR are comparing it to the libraries listed below

• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆21Updated 2 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 5 months ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆17Updated 3 months ago
• hemstrow / snpR
  ☆30Updated this week
• zjnolen / PopGLen
  Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…
  ☆15Updated 2 months ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 3 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• kaspermunch / PopulationGenomicsCourse
  Course in population genomics at BiRC
  ☆12Updated 4 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• guillemylla / Crickets_Genome_Annotation
  Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
  ☆13Updated 3 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆14Updated 5 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆37Updated last year
• ANGSD / NgsRelate
  ☆43Updated 5 months ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated this week
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated last month
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Updated 2 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 5 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆60Updated 10 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 3 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago