deaconjs / ThousandVariantCallersRepo
Thousand Variant Callers Project Repository
☆72Updated 5 years ago
Alternatives and similar repositories for ThousandVariantCallersRepo:
Users that are interested in ThousandVariantCallersRepo are comparing it to the libraries listed below
- An awk-like VCF parser☆56Updated last year
- ☆39Updated last year
- Data and information about the Polaris study☆53Updated 5 years ago
- ☆46Updated 5 years ago
- Structural Variant Index☆72Updated 4 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆78Updated 11 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- CN-Learn☆29Updated 5 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 2 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- CNV screening and annotation tool☆25Updated 8 years ago