deaconjs / ThousandVariantCallersRepoLinks
Thousand Variant Callers Project Repository
☆73Updated 5 years ago
Alternatives and similar repositories for ThousandVariantCallersRepo
Users that are interested in ThousandVariantCallersRepo are comparing it to the libraries listed below
Sorting:
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago
- BigWig and BAM utilities☆97Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- ☆44Updated last year
- ☆78Updated 11 years ago
- ☆46Updated 5 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- Structural Variant Index☆75Updated 9 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated 2 months ago
- TIDDIT - structural variant calling☆76Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Powerful statistics for VCF files☆70Updated 2 months ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago