deaconjs / ThousandVariantCallersRepoLinks
Thousand Variant Callers Project Repository
☆74Updated 6 years ago
Alternatives and similar repositories for ThousandVariantCallersRepo
Users that are interested in ThousandVariantCallersRepo are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Structural Variant Index☆75Updated last year
- ☆46Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- ☆44Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Data and information about the Polaris study☆55Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated last month
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- ☆55Updated 5 years ago