Thousand Variant Callers Project Repository
☆75Oct 17, 2019Updated 7 years ago
Alternatives and similar repositories for ThousandVariantCallersRepo
Users that are interested in ThousandVariantCallersRepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- sort genomic data☆36Oct 21, 2026Updated last week
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆16Mar 4, 2019Updated 7 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆340Updated this week
- ☆28Feb 17, 2021Updated 5 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- ☆82Nov 30, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 3 months ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆341Oct 23, 2026Updated last week
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R☆37Jan 28, 2022Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 8 months ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated last month
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Oct 17, 2026Updated last week
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆10Jun 5, 2023Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 7 years ago