sndrtj / afplotLinks
Plot allele frequencies in VCF files
☆11Updated 6 years ago
Alternatives and similar repositories for afplot
Users that are interested in afplot are comparing it to the libraries listed below
Sorting:
- toolkit to process gtf files☆17Updated 4 years ago
- Direct RNA publication scripts☆11Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- All kinds of NGS analysis pipeline☆12Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A series of scripts to automate sequence workflows☆19Updated 2 weeks ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12Updated 8 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Adapters for trimming☆30Updated 7 years ago
- a bucket of bioinformatics scripts☆13Updated last week
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 6 years ago
- small scripts, functions or bits of code for parsing genomic data☆14Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 10 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆51Updated 6 years ago
- Structural variant caller☆55Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Genome Annotation Without Nightmares☆46Updated last week
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year