genome-nexus / genome-nexus-annotation-pipelineLinks
Library and tool for annotating MAF files using Genome Nexus Webserver API
☆12Updated 3 months ago
Alternatives and similar repositories for genome-nexus-annotation-pipeline
Users that are interested in genome-nexus-annotation-pipeline are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆38Updated 5 years ago
- ☆13Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- Utility functions for FACETS☆36Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆82Updated this week
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆23Updated 6 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 5 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- ☆34Updated 6 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 weeks ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 8 months ago
- ☆43Updated 2 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- ☆40Updated 7 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 8 months ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- ☆30Updated last year
- A computational workflow for exitron splicing identification☆12Updated 9 months ago