genome-nexus / genome-nexus-annotation-pipelineLinks
Library and tool for annotating MAF files using Genome Nexus Webserver API
☆11Updated last week
Alternatives and similar repositories for genome-nexus-annotation-pipeline
Users that are interested in genome-nexus-annotation-pipeline are comparing it to the libraries listed below
Sorting:
- Clinical interpretation of somatic mutations in cancer☆49Updated 8 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tumor Mutational Burden☆62Updated 3 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- ☆33Updated 3 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last month
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated 3 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆91Updated this week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 4 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last month
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆87Updated last week
- R package containing useful functions for mutational signature analysis☆84Updated this week
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 weeks ago
- ☆27Updated 10 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆50Updated this week
- ☆72Updated 2 years ago
- ☆46Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago