fmicompbio / monaLisaLinks
binned motif enrichment analysis and visualisation
☆40Updated last week
Alternatives and similar repositories for monaLisa
Users that are interested in monaLisa are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- An R package to analyze single-cell V(D)J data☆28Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 9 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ☆49Updated 11 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago