fmicompbio / monaLisa
binned motif enrichment analysis and visualisation
☆40Updated 2 weeks ago
Alternatives and similar repositories for monaLisa:
Users that are interested in monaLisa are comparing it to the libraries listed below
- ☆29Updated 3 weeks ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- ☆36Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- ☆38Updated 4 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆45Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 5 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- ☆29Updated last year
- ☆46Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆18Updated 2 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆35Updated last year
- ☆35Updated 11 months ago
- Network construction Algorithm☆20Updated 5 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆17Updated 6 years ago
- scWGCNA☆56Updated 2 years ago
- ☆12Updated 9 months ago
- ☆20Updated last year