Alternatives and similar repositories for archs4py

Users that are interested in archs4py are comparing it to the libraries listed below

• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆43Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 3 years ago
• altoslabs / perturbench
  ☆25Updated 4 months ago
• jshilts / shilts-et-al-2022-immunoreceptors
  Supporting data files and code for the publication by Shilts et al.
  ☆30Updated 2 years ago
• lanagarmire / Asgard
  ☆42Updated last year
• GreiffLab / immuneSIM
  ☆38Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆48Updated 3 weeks ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆20Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• xiongxslab / Translatomer
  ☆20Updated 2 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 3 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated last month
• mhorlacher / rbpnet
  ☆18Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆29Updated 2 years ago
• theislab / tcellmatch
  ☆39Updated 4 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 3 years ago
• joan-smith / comprehensive-tcga-survival
  Comprehensive survival analyses on the TCGA data.
  ☆17Updated 2 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 2 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆62Updated 8 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆39Updated 8 months ago