MaayanLab / archs4py

Related projects ⓘ

Alternatives and complementary repositories for archs4py

• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆36Updated 8 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆14Updated 2 weeks ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆22Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• ncborcherding / Ibex
  Using BCR and expression for sequence embedding
  ☆19Updated 3 weeks ago
• lanagarmire / Asgard
  ☆40Updated 10 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆30Updated 4 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆34Updated last year
• SchubertLab / mvTCR
  ☆45Updated 2 weeks ago
• crazyhottommy / Machine_learning_drug_discovery
  ☆23Updated last week
• zhouzilu / cTPnet
  cTPnet Package
  ☆23Updated 2 years ago
• yjgeno / GenKI
  ☆12Updated 7 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆35Updated last year
• antigenomics / tcr-annotation-methodology
  📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
  ☆13Updated 4 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆39Updated 2 months ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆55Updated 3 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆30Updated last year
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆12Updated 3 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆21Updated 5 years ago
• GreiffLab / immuneSIM
  ☆38Updated 11 months ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• oscar-franzen / PanglaoDB
  metadata and data from the database
  ☆38Updated 4 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆13Updated 4 years ago
• CSB5 / CaDRReS-Sc
  CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
  ☆14Updated 2 years ago
• theislab / multicpa
  ☆13Updated 2 years ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated last year
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆45Updated 3 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆23Updated last year