Python package for phage-host interaction prediction
☆15Jul 10, 2026Updated this week
Alternatives and similar repositories for GenoPHI
Users that are interested in GenoPHI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise machine learning models for phage-host interaction prediction☆22Jun 23, 2024Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Jun 1, 2026Updated last month
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 6 months ago
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Official repository for the ProteinDJ protein design pipeline☆123Jul 10, 2026Updated last week
- Points of Significance: Adding realism to the SIR model for infectious disease epidemics☆13Nov 30, 2021Updated 4 years ago
- ☆13Jun 9, 2026Updated last month
- ☆22Sep 26, 2025Updated 9 months ago
- ☆17Nov 2, 2024Updated last year
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated last year
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- AIRFold Protein Structure Prediction System☆12Mar 24, 2025Updated last year
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- This repo contains the results data for Round 2 of EGFR Protein Design Competition.☆20Mar 18, 2025Updated last year
- ☆13Aug 15, 2025Updated 11 months ago
- Metal and Water prediction☆14Feb 5, 2025Updated last year
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computati…☆17Nov 7, 2021Updated 4 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆16Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Antibody structure prediction☆37Dec 16, 2025Updated 7 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- Algorithmic trading bot in Rust with multi-agent architecture, 10 strategies, risk management, and native egui UI. Supports Alpaca & Bina…☆15Jun 13, 2026Updated last month
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆17Jun 23, 2026Updated 3 weeks ago
- Source code for our paper: "ARIA: Training Language Agents with Intention-Driven Reward Aggregation".☆30Aug 9, 2025Updated 11 months ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆32May 3, 2026Updated 2 months ago
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆13Jun 9, 2026Updated last month
- LLMs for microplate data☆43Oct 11, 2024Updated last year
- Reaction Analysis through Imaging of Chemical Units☆17Dec 5, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- Design and documentation for the 2p microscope.☆17Feb 20, 2025Updated last year
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 2 months ago
- ☆12Aug 13, 2024Updated last year
- ☆31Dec 12, 2024Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 6 months ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Jun 16, 2026Updated last month