VCCRI / SVPVLinks
Structural Variant Prediction Viewer
☆35Updated 8 years ago
Alternatives and similar repositories for SVPV
Users that are interested in SVPV are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆51Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- ☆35Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- ☆44Updated last year
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- ☆84Updated 11 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Sample Contamination Estimate from VCF☆20Updated last year
- Structural variant merging tool☆57Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- Structural variant caller☆55Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Structural variant caller for low-depth long-read sequencing data☆47Updated this week
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 5 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Toolkit for genome-wide analysis of tandem repeats☆59Updated 3 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Structural Variant Index☆75Updated last year