calico / scmmdLinks
Maximum mean discrepancy comparisons for single cell profiling experiments
☆18Updated 3 years ago
Alternatives and similar repositories for scmmd
Users that are interested in scmmd are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆28Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 11 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 9 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆60Updated 5 years ago
- ☆37Updated this week
- ☆56Updated last year
- Fit generalized linear models in python.☆28Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 3 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆16Updated 5 years ago
- PhenoPLIER☆13Updated last year
- ☆11Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆11Updated 10 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- ☆16Updated 3 years ago