calico / scmmdLinks
Maximum mean discrepancy comparisons for single cell profiling experiments
☆18Updated 3 years ago
Alternatives and similar repositories for scmmd
Users that are interested in scmmd are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Conditional out-of-distribution prediction☆61Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆16Updated 3 years ago
- ☆38Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- ☆34Updated 8 months ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 10 months ago
- ☆28Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆32Updated 9 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- ☆14Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- A tool for single-cell data analysis.☆41Updated 3 months ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago