calico / scmmdLinks
Maximum mean discrepancy comparisons for single cell profiling experiments
☆16Updated 3 years ago
Alternatives and similar repositories for scmmd
Users that are interested in scmmd are comparing it to the libraries listed below
Sorting:
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆53Updated 5 years ago
- ☆27Updated last year
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- ☆16Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- ☆16Updated 2 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Variant impact phenotyping using Perturb-seq☆9Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 5 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 9 months ago
- ☆19Updated 4 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- ☆11Updated 5 years ago
- ☆37Updated this week
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆28Updated last month
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- A python package for chromVAR☆28Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago