BuysDB / SingleCellMultiOmicsLinks
Tools which deal with multiple single cell measurements
☆24Updated 5 months ago
Alternatives and similar repositories for SingleCellMultiOmics
Users that are interested in SingleCellMultiOmics are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- Links to ATAC-seq analysis tools☆77Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- ☆63Updated 5 years ago
- SNV calling from single cell sequencing☆118Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Tools for single-cell data processing☆132Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆88Updated last month
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Tutorial Website☆63Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- Analysis of Paired-Tag datasets☆43Updated 2 years ago
- ☆82Updated 2 years ago