Tools which deal with multiple single cell measurements
☆24Aug 12, 2025Updated 6 months ago
Alternatives and similar repositories for SingleCellMultiOmics
Users that are interested in SingleCellMultiOmics are comparing it to the libraries listed below
Sorting:
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- A shiny app for metacell analysis☆10Feb 23, 2026Updated last week
- Molecular interactions inference from single-cell multi-omics data☆30Jan 14, 2026Updated last month
- ☆13Feb 12, 2026Updated 2 weeks ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆16May 23, 2022Updated 3 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- ☆12Oct 23, 2023Updated 2 years ago
- From QC to summary statistics☆17Jun 27, 2020Updated 5 years ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated last year
- ☆18Oct 22, 2024Updated last year
- ☆38Feb 9, 2026Updated 3 weeks ago
- Pipeline for designing custom probes against human genes☆21Jan 30, 2026Updated last month
- ☆17Jul 13, 2024Updated last year
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆35Mar 30, 2025Updated 11 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆23Sep 11, 2024Updated last year
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆26Jul 8, 2025Updated 7 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆25Updated this week
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated last week
- ☆60Apr 5, 2024Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- ☆29Nov 15, 2023Updated 2 years ago
- R package IReNA☆29Nov 13, 2024Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆21May 6, 2025Updated 9 months ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and C…☆11Updated this week
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated 10 months ago