BuysDB / SingleCellMultiOmicsLinks
Tools which deal with multiple single cell measurements
☆24Updated 4 months ago
Alternatives and similar repositories for SingleCellMultiOmics
Users that are interested in SingleCellMultiOmics are comparing it to the libraries listed below
Sorting:
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆62Updated 5 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 11 months ago
- SNV calling from single cell sequencing☆118Updated last year
- Tools for single-cell data processing☆130Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆85Updated last year
- Repository for Cibersortx☆61Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆58Updated last month
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆47Updated last week
- ☆59Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated last month
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ☆87Updated 4 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆154Updated last month