Tools which deal with multiple single cell measurements
☆25May 14, 2026Updated last week
Alternatives and similar repositories for SingleCellMultiOmics
Users that are interested in SingleCellMultiOmics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell type purification by single-cell transcriptome-trained sorting☆15Jul 8, 2019Updated 6 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated 2 weeks ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- ☆12Sep 8, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆38Apr 21, 2026Updated last month
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- From QC to summary statistics☆17Jun 27, 2020Updated 5 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆25Feb 21, 2022Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆45Aug 13, 2024Updated last year
- ☆14Feb 12, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16May 23, 2022Updated 3 years ago
- Implements several Markov chain Monte Carlo (MCMC) algorithms for the latent Dirichlet allocation (LDA) model☆11Feb 11, 2020Updated 6 years ago
- A shiny app for metacell analysis☆10May 15, 2026Updated last week
- ☆12Oct 23, 2023Updated 2 years ago
- ☆86Jul 13, 2020Updated 5 years ago
- A Python library for the design and control of artificial swarms.☆13Sep 10, 2017Updated 8 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for designing custom probes against human genes☆23Jan 30, 2026Updated 3 months ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- R package for large-scale CNV analysis from RNA-seq☆20Dec 21, 2023Updated 2 years ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆40Mar 30, 2025Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- ☆26Dec 10, 2025Updated 5 months ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆18Apr 26, 2021Updated 5 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Mar 20, 2026Updated 2 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆30Jul 8, 2025Updated 10 months ago
- ☆12Apr 13, 2020Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- ☆20Oct 22, 2020Updated 5 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated 2 years ago