BuysDB / SingleCellMultiOmicsLinks
Tools which deal with multiple single cell measurements
☆24Updated 2 weeks ago
Alternatives and similar repositories for SingleCellMultiOmics
Users that are interested in SingleCellMultiOmics are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Tools for single-cell data processing☆126Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆63Updated 2 months ago
- ☆61Updated 5 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆79Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- ☆59Updated 11 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- ☆34Updated 6 years ago
- Repository for Cibersortx☆61Updated 4 years ago