navinlabcode / copykitLinks
Toolkit for single-cell copy number analysis
☆29Updated last month
Alternatives and similar repositories for copykit
Users that are interested in copykit are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆53Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆23Updated last month
- ☆18Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated 3 weeks ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- ☆34Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 2 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- ☆48Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated last week