Toolkit for single-cell copy number analysis
☆35Dec 15, 2025Updated 7 months ago
Alternatives and similar repositories for copykit
Users that are interested in copykit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated 11 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆19Jul 8, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- Single-cell copy number calling and event history reconstruction.☆28May 13, 2026Updated 2 months ago
- ☆14Jul 22, 2025Updated 11 months ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 9 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆32Sep 30, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cell identification in high-resolution Spatial Transcriptomics☆15Dec 3, 2025Updated 7 months ago
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆25Jun 23, 2026Updated 3 weeks ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Repository for the clone2vec python package☆24May 6, 2026Updated 2 months ago
- ☆18Mar 6, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 7 months ago
- ☆20Nov 12, 2025Updated 8 months ago
- ☆12Sep 7, 2023Updated 2 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆22Dec 25, 2022Updated 3 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆223Feb 4, 2026Updated 5 months ago
- ☆12Apr 13, 2020Updated 6 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Updated this week
- ☆133Mar 27, 2022Updated 4 years ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆43Aug 17, 2021Updated 4 years ago
- ☆31Jul 7, 2026Updated 2 weeks ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆34Jan 29, 2026Updated 5 months ago
- ☆37Jan 22, 2026Updated 5 months ago