CSB5 / CaDRReS-Sc
CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for CaDRReS-Sc
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Standalone shiny server container for viewing CellChat object☆12Updated 3 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆11Updated 2 years ago
- ☆39Updated 3 years ago
- ☆14Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Materials and scripts for building cell type encyclopedia table☆15Updated 2 months ago
- ☆29Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- ☆19Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Using BCR and expression for sequence embedding☆19Updated 3 weeks ago
- R package IReNA☆26Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆37Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last year
- ☆10Updated 3 weeks ago
- ☆40Updated 6 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- ☆37Updated 10 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- ☆40Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago