CSB5 / CaDRReS-ScLinks
CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
☆17Updated 3 years ago
Alternatives and similar repositories for CaDRReS-Sc
Users that are interested in CaDRReS-Sc are comparing it to the libraries listed below
Sorting:
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆58Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Single-cell Case Control Analysis☆52Updated last week
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- ☆16Updated last year
- Gene group activity utility functions for Scanpy☆88Updated 9 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- scWGCNA☆61Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- ☆37Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- analysis script for GBM single cell RNA seq data☆21Updated 4 years ago
- cTPnet Package☆25Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- ☆30Updated 2 years ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆88Updated 2 years ago
- ACTIONet single-cell analysis framework☆42Updated last year