A tool for single-cell data analysis.
☆42Sep 24, 2025Updated 10 months ago
Alternatives and similar repositories for scDHA
Users that are interested in scDHA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- ☆43Jun 11, 2022Updated 4 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- ☆101Mar 24, 2023Updated 3 years ago
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 5 years ago
- ☆19May 30, 2022Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scDCC: Single Cell Deep Constrained Clustering☆45Jul 10, 2024Updated 2 years ago
- A common data format and inference environment for single-cell trajectories 📦☆19Mar 31, 2026Updated 4 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆27Dec 25, 2023Updated 2 years ago
- scDeepCluster for Single Cell RNA-seq data☆107Jul 10, 2024Updated 2 years ago
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Jul 22, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- ☆12Jan 8, 2026Updated 7 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆18Mar 31, 2026Updated 4 months ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated 2 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Jun 17, 2026Updated last month