waldronlab / ProjectAsPackage
Demonstration of the use of an R package to organize a data analysis project
☆21Updated 4 years ago
Alternatives and similar repositories for ProjectAsPackage:
Users that are interested in ProjectAsPackage are comparing it to the libraries listed below
- Explore design matrices interactively with R/Shiny☆37Updated last month
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Brings SummarizedExperiment to the tidyverse☆26Updated 8 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 8 months ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Gene-level general linear mixed model☆19Updated 3 weeks ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- Visualise correlation results and test significancies of these☆21Updated 5 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Automate package and project setup for Bioconductor packages☆50Updated 2 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Template for building a bioconductor workshop package using github actions☆20Updated 7 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆43Updated 3 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated this week
- ☆20Updated last month
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated last year
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- R interface to 'Gos'☆37Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- ☆11Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Bioconductor package that makes BIG data pint-sized.☆20Updated last year
- Save and load your R sessions faster using parallel compression☆25Updated 6 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 9 months ago
- Read HOMER motif analysis output in R.☆15Updated 6 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆30Updated 3 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago