smgogarten / GWASTools
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
☆16Updated 4 months ago
Related projects: ⓘ
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 4 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated 6 months ago
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- Create LocusZoom-style plots in R.☆20Updated last year
- An R package for generating comparative regional association plots☆18Updated 4 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆17Updated 2 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆14Updated 2 weeks ago
- GWAS genetics Fine-mapping method☆15Updated 4 months ago
- ☆16Updated 4 months ago
- Primo☆16Updated 3 years ago
- Fine-mapping method only using summary statistics☆15Updated 8 years ago
- Fine-mapping with infinitesimal effects☆13Updated 6 months ago
- Multi-Omic Strategies for TWAS☆12Updated last year
- ☆16Updated last year
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆17Updated 2 weeks ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated 7 months ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆13Updated last year
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆11Updated 7 months ago
- Interactive eQTL visualizations☆13Updated last year
- Cross-population fine-mapping☆21Updated 4 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago
- Code for EpiMap data browser☆14Updated 3 months ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Updated 5 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆11Updated 5 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆12Updated 2 years ago