smgogarten / GWASToolsLinks
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
☆18Updated 6 months ago
Alternatives and similar repositories for GWASTools
Users that are interested in GWASTools are comparing it to the libraries listed below
Sorting:
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆20Updated last month
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Updated 6 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 11 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- ☆24Updated 4 years ago
- PredictDB Pipeline for GTEx v7 data☆16Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Readme☆10Updated 5 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Fine-mapping with infinitesimal effects☆17Updated 4 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated last month
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated 4 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated last week
- TWAS-pipeline☆23Updated 4 years ago
- Cross-population fine-mapping☆37Updated 10 months ago
- SCALLOP-INF analysis☆20Updated last year
- An R package for generating comparative regional association plots☆18Updated last week
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- ☆12Updated 2 years ago
- Fast manhattenplots using ggplot2☆12Updated last year
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆13Updated last year
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago