Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
☆18Mar 18, 2025Updated 11 months ago
Alternatives and similar repositories for GWASTools
Users that are interested in GWASTools are comparing it to the libraries listed below
Sorting:
- Fast manhattenplots using ggplot2☆13Feb 19, 2024Updated 2 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 10 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 6 months ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- ☆13May 16, 2016Updated 9 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- ☆24Jan 8, 2026Updated last month
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 5 months ago
- ☆12Jun 16, 2023Updated 2 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 6 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Sep 26, 2025Updated 5 months ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Feb 9, 2026Updated 3 weeks ago
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Jul 2, 2025Updated 8 months ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated last month
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 6 years ago
- ☆34Mar 7, 2021Updated 4 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 6 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆24Nov 9, 2017Updated 8 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Aug 31, 2018Updated 7 years ago
- ☆21Nov 15, 2024Updated last year
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last week
- ☆10Dec 2, 2025Updated 3 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago