smgogarten / GWASToolsLinks
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
☆18Updated 3 months ago
Alternatives and similar repositories for GWASTools
Users that are interested in GWASTools are comparing it to the libraries listed below
Sorting:
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 2 months ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- A GWAS fine-mapping pipeline used in CAUSALdb☆26Updated 3 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- R interface to genome annotation files and the UCSC genome browser☆33Updated 3 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated last year
- anor: an annotation and visualization system based on R and Shiny framework☆33Updated 5 years ago
- Bedfile perturbation tool☆17Updated last year
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆19Updated 2 months ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Updated 4 months ago
- Scripts used for generating Neale Lab UKB results☆20Updated 2 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Updated 6 years ago
- A rapido and lightweight method for PGS computation☆14Updated 4 months ago
- Primo☆16Updated 3 years ago
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 3 years ago
- Fine-mapping pipeline for Open Targets Genetics☆26Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated last month
- ☆16Updated last year
- Code for EpiMap data browser☆14Updated last year
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Updated 5 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Updated 3 months ago
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆38Updated 2 weeks ago
- Format of GWAS summary statistics.☆12Updated 11 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 6 years ago
- In-house computational biology workflows at Columbia Neurology☆34Updated last year