smgogarten / GWASToolsLinks
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
☆18Updated 7 months ago
Alternatives and similar repositories for GWASTools
Users that are interested in GWASTools are comparing it to the libraries listed below
Sorting:
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- a set of NGS pipelines☆24Updated last week
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆20Updated 2 months ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Updated 6 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated 5 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- Fine-mapping with infinitesimal effects☆19Updated 5 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- ☆24Updated 4 years ago
- TWAS-pipeline☆24Updated 4 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 2 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 6 months ago
- Query the gene models of a given organism/assembly☆27Updated this week
- ☆21Updated 2 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Updated 3 years ago
- ☆18Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- An R package for generating comparative regional association plots☆18Updated 3 weeks ago
- Repository for resources we'd like to share with the community.☆25Updated 3 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 11 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆17Updated last year