Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize protein similarity within genes.
☆46Oct 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for ORFanage
Users that are interested in ORFanage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TD2☆43May 17, 2026Updated 5 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated 2 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆23Apr 29, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Apr 20, 2026Updated 6 months ago
- Scoring GT/AG sites for improving spliced alignment☆60Nov 10, 2025Updated 11 months ago
- End-to-end provenance tracking throughout transcript merging and interpretation☆19Oct 19, 2026Updated last week
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆27Oct 10, 2026Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆132Updated this week
- Emending Alignment of Spliced Transcript Reads☆13Jan 19, 2026Updated 9 months ago
- a lexicographically-based GTF/GFF sorter☆39Aug 8, 2026Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆293Jul 7, 2026Updated 3 months ago
- ☆24Apr 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆63Jul 29, 2026Updated 3 months ago
- Snakemake port of the original Galba pipeline☆13Updated this week
- long read RNA-seq quantification☆127Updated this week
- Parsing and evaluating gene annotation and spliced alignment☆31Jul 22, 2025Updated last year
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆588Sep 7, 2026Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆282Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 10 months ago
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- 🌿🫐 bramble: project spliced genomic alignments into transcriptomic space☆19Oct 4, 2026Updated 3 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 8 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 8 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Sep 11, 2025Updated last year
- ☆10Nov 20, 2025Updated 11 months ago
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆48Oct 22, 2026Updated last week
- Splice junction analysis and filtering from BAM files☆44Mar 31, 2022Updated 4 years ago
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated 2 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 9 months ago