alevar / ORFanageLinks
Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize protein similarity within genes.
☆36Updated 4 months ago
Alternatives and similar repositories for ORFanage
Users that are interested in ORFanage are comparing it to the libraries listed below
Sorting:
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- DMR Identification Tool☆34Updated 2 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- ☆82Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆56Updated 8 months ago
- ☆31Updated 11 months ago
- Master of Pores 2☆23Updated 10 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 months ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- Long RNA-seq analysis workflow☆20Updated 2 weeks ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 8 months ago
- ☆23Updated 5 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- ☆17Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago