alevar / ORFanageLinks
Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize protein similarity within genes.
☆43Updated last month
Alternatives and similar repositories for ORFanage
Users that are interested in ORFanage are comparing it to the libraries listed below
Sorting:
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated 2 weeks ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- DMR Identification Tool☆34Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last month
- Master of Pores 2☆23Updated last year
- ☆84Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- for visual evaluation of read support for structural variation☆56Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- ☆31Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated 2 months ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- Long RNA-seq analysis workflow☆21Updated 3 months ago
- ☆23Updated 8 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- a lexicographically-based GTF/GFF sorter☆38Updated 9 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago