alevar / ORFanageLinks
Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize protein similarity within genes.
☆37Updated 5 months ago
Alternatives and similar repositories for ORFanage
Users that are interested in ORFanage are comparing it to the libraries listed below
Sorting:
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 8 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 3 months ago
- DMR Identification Tool☆34Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- Long-read splice alignment with high accuracy☆63Updated last year
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Master of Pores 2☆23Updated 11 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- ☆82Updated 2 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 11 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- A python package for showing JBrowse views☆26Updated last year
- Fast sequencing data quality metrics☆31Updated 2 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- gatk4 RNA variant calling pipeline☆55Updated this week