Shao-Group / scallop2Links
☆11Updated 3 weeks ago
Alternatives and similar repositories for scallop2
Users that are interested in scallop2 are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 weeks ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 8 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- ☆19Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Structural variant caller☆54Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ☆23Updated 6 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 7 months ago
- ☆31Updated 10 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Variant annotation and merging pipeline☆36Updated last month
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 11 months ago