Scripts for stat and plot figures in rice microbiome paper
☆20May 12, 2019Updated 6 years ago
Alternatives and similar repositories for Zhang2019NBT
Users that are interested in Zhang2019NBT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24May 3, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A pipeline for scRNA-seq data analysis☆15Mar 26, 2025Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆108May 15, 2020Updated 5 years ago
- Microbial ecological network visualization clustering☆145Nov 20, 2025Updated 4 months ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Jun 1, 2021Updated 4 years ago
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 2 years ago
- ☆23Mar 2, 2019Updated 7 years ago
- ☆14Jun 24, 2019Updated 6 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Mar 26, 2026Updated 3 weeks ago
- Identification of differentially methylated genes in biomedical data☆15Jan 26, 2026Updated 2 months ago
- ☆15Jan 12, 2026Updated 3 months ago
- 历史文档备份(只包含2019年和2020年)☆206Jul 20, 2021Updated 4 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆72Mar 16, 2025Updated last year
- ☆13Mar 17, 2019Updated 7 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- supplementary tables and files☆10Oct 13, 2023Updated 2 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆87Feb 21, 2026Updated last month
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tao Yan's Plot Toolkit☆11Aug 20, 2019Updated 6 years ago
- ☆21May 6, 2025Updated 11 months ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- ☆10Jun 15, 2017Updated 8 years ago
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago