Microbe-Metabolite INteractions-based metabolic profiles Predictor
☆16Mar 17, 2023Updated 2 years ago
Alternatives and similar repositories for MMINP
Users that are interested in MMINP are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆38Dec 23, 2025Updated 2 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- ☆15Jul 25, 2025Updated 7 months ago
- Single-cell Analysis of Host-Microbiome Interactions☆11Jul 17, 2025Updated 7 months ago
- Homepage for YuLab-SMU☆14Feb 19, 2026Updated last week
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 4 months ago
- useful functions for ggplot☆18Jul 16, 2025Updated 7 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 5 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- ☆15Oct 7, 2025Updated 4 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆11Jul 25, 2025Updated 7 months ago
- provide extra layers for ggplot2☆36May 31, 2025Updated 9 months ago
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 5 years ago
- Decorate a plot with associated information☆126Sep 12, 2025Updated 5 months ago
- download files in R using wget -c☆16Aug 20, 2025Updated 6 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Phylogenetic Isometric Log Ratio☆19Oct 15, 2024Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Jan 15, 2026Updated last month
- A healthy human gut genome collection☆25Aug 21, 2025Updated 6 months ago
- Software for predicting translation initiation rates in bacteria☆31Jul 30, 2025Updated 7 months ago
- single-cell decorrelated module networks☆30Aug 24, 2024Updated last year
- R/Package Version Check☆22Oct 22, 2021Updated 4 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Jan 30, 2026Updated last month
- Model-based Integration of Metabolite Observations and Species Abundances☆24Feb 21, 2020Updated 6 years ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆14Oct 16, 2025Updated 4 months ago
- ☆33Oct 27, 2020Updated 5 years ago
- Create KEGG.db Package☆64Jan 29, 2026Updated last month
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- ☆78Oct 16, 2024Updated last year
- A comprehensive R package for deep mining microbiome☆191Nov 3, 2025Updated 3 months ago
- Predicting Future Influenza Virus Sequences with Machine Learning☆31Feb 11, 2018Updated 8 years ago
- Miscellaneous functions commonly used by 'YuLab-SMU'.☆38Feb 11, 2026Updated 2 weeks ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Dec 8, 2022Updated 3 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Jul 6, 2021Updated 4 years ago
- Readability enhancement tool for bioinformatics data file format☆29Jan 9, 2020Updated 6 years ago