Alternatives and similar repositories for MWAS

Users that are interested in MWAS are comparing it to the libraries listed below

• pangenome / pggb-workshop
  tutorial on pggb
  ☆34Updated 4 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last month
• abdohlman / tcma_code
  Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
  ☆12Updated last year
• grp-bork / microbial_load_predictor
  R package to predict microbial loads
  ☆15Updated 2 months ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆29Updated 5 months ago
• Asa12138 / pctax
  Professional Comprehensive Omics Data Analysis
  ☆18Updated 5 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 6 months ago
• LappalainenLab / lorals_paper_code
  ☆25Updated 3 years ago
• Asa12138 / MetaNet
  Network analysis for multi-omics
  ☆40Updated last month
• Aufiero / circRNAprofiler
  ☆10Updated last week
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆24Updated 2 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• a2iEditing / deNovo-Detect
  ☆12Updated 2 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated last year
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• RitchieLabIGH / IRFinder
  ☆15Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆25Updated 2 months ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆19Updated 6 years ago
• EvaYiwenWang / PLSDAbatch
  Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.
  ☆12Updated 7 months ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• knausb / vcfR_documentation
  Documentation for vcfR
  ☆11Updated this week
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆43Updated 2 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆23Updated 2 months ago
• junjunlab / ggcirclize
  Creating Circular Graph with the Grammar of GGplot2
  ☆19Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆36Updated last month