Alternatives and similar repositories for sodar-core-legacy

Users that are interested in sodar-core-legacy are comparing it to the libraries listed below

• solvebio / veppy
  Variant Effect Prediction for Python
  ☆15Updated 8 years ago
• seandavi / ci4cc-informatics-resources
  Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…
  ☆22Updated 6 years ago
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 3 years ago
• Steven-N-Hart / VariantDB_Challenge
  Finding a scalable alternative to the VCF File for genomics analysis
  ☆14Updated 8 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 8 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆11Updated 5 years ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 4 months ago
• ekg / 1000G-integration
  variant integration methods for the 1000 Genomes Project
  ☆21Updated 7 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• Yandell-Lab / VVP-pub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Updated 7 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• dnil / rhocall
  Call regions of homozygosity and make tentative UPD calls
  ☆11Updated 2 weeks ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 11 months ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• hwanglab / divine
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Updated 6 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 7 months ago
• bihealth / digestiflow-server
  Web-based database system for flow cell management (incl. REST API)
  ☆15Updated last year
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• common-workflow-lab / gxargparse
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Updated 5 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 9 months ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago