bihealth / sodar-core-legacy
LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.
☆15Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for sodar-core-legacy
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 5 years ago
- Variant Effect Prediction for Python☆15Updated 7 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆15Updated 6 years ago
- Allele frequency filter app☆14Updated 2 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 10 months ago
- Open Targets Genetics UI☆14Updated last year
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆10Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Updated 4 years ago
- Web-based database system for flow cell management (incl. REST API)☆15Updated 8 months ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last year
- ☆11Updated 3 weeks ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- A comprehensive and intelligent clinical phasing tool☆13Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆12Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Unix-based RNA-seq quantification pipeline☆10Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆10Updated last year
- Class materials for the NIH HPC snakemake class☆16Updated last month