NCBI-Hackathons / GoodDocLinks
A Template for Clear and Simple Documentation of Bioinformatics Code
☆16Updated 7 years ago
Alternatives and similar repositories for GoodDoc
Users that are interested in GoodDoc are comparing it to the libraries listed below
Sorting:
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- conda recipes for genomic data☆85Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 10 months ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- TOPMed analysis pipeline☆52Updated last year
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago