Alternatives and similar repositories for GoodDoc:

Users that are interested in GoodDoc are comparing it to the libraries listed below

• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• statgen / fastQValidator
  Validate FastQ Files
  ☆36Updated 6 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆34Updated 2 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last week
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 5 years ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 7 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• kevinblighe / Awesome-Bioinformatics-Benchmarks
  A curated list of bioinformatics bench-marking papers and resources.
  ☆14Updated 5 years ago
• Transipedia / dekupl-run
  Identify differentially expressed k-mers between RNA-Seq datasets
  ☆11Updated 4 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆33Updated 2 months ago
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 5 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 2 weeks ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆50Updated 3 weeks ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated last week
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• niaid / python_biologist
  Python Programming for Biologists
  ☆11Updated last year
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆38Updated 3 years ago
• CCBR / Pipeliner
  An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
  ☆4Updated last year
• ImperialCardioGenetics / uORFs
  ☆18Updated 4 years ago