AnaLysis routines for ePigenomicS data - π« Bioconductor project
β16Jul 7, 2023Updated 3 years ago
Alternatives and similar repositories for ALPS
Users that are interested in ALPS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β28May 8, 2021Updated 5 years ago
- Moderator Templates for https://www.biostars.org/β11Apr 15, 2021Updated 5 years ago
- Monte Carlo Reference-based Consensus Clusteringβ38Mar 14, 2020Updated 6 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-makerβ12May 21, 2024Updated 2 years ago
- PARE: a computational method to Predict Active Regulatory Elementsβ11Aug 8, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Non-parametric structural variant genotyperβ15Nov 18, 2021Updated 4 years ago
- Fork of https://code.google.com/p/ngs-analysisβ17Sep 14, 2013Updated 12 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.β11Jul 7, 2017Updated 9 years ago
- Visualize genomic data by Hilbert curveβ44Apr 23, 2026Updated 3 months ago
- A tool for detecting CNVs from WGS dataβ11Jul 9, 2020Updated 6 years ago
- Relevant papers for CNV and SV approachesβ94Nov 5, 2024Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriantsβ10Mar 6, 2023Updated 3 years ago
- Subsampling of high-throughput sequencing count dataβ20May 10, 2019Updated 7 years ago
- A python script used to annotate genomic intervals.β18May 29, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A light-weight HTML lab notebook generatorβ18Jun 16, 2023Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.β17Nov 29, 2018Updated 7 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approachβ¦β13Apr 5, 2026Updated 3 months ago
- Ressources for Boinformatics Trainingsβ14Nov 20, 2023Updated 2 years ago
- DiagnoSys is a comprehensive web application that provides advanced detection and analysis for various health conditions. This project leβ¦β14May 6, 2024Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylationβ23Mar 4, 2019Updated 7 years ago
- Genomic plot in trellis layoutβ43Jan 30, 2026Updated 5 months ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seuratβ10Dec 15, 2023Updated 2 years ago
- co-expressed gene-set enrichment analysisβ13Nov 20, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges frameworkβ18May 10, 2026Updated 2 months ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objectsβ230Jul 13, 2026Updated last week
- β25Aug 20, 2018Updated 7 years ago
- β198Sep 22, 2020Updated 5 years ago
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencingβ14May 22, 2023Updated 3 years ago
- PROGENY Python implementationβ12Apr 5, 2022Updated 4 years ago
- Read HOMER motif analysis output in R.β17Mar 1, 2018Updated 8 years ago
- NGS Tutorialβ15Apr 22, 2017Updated 9 years ago
- β40Apr 16, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ29Oct 11, 2025Updated 9 months ago
- Mitochondrial Solar Plotβ25Feb 25, 2017Updated 9 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCeβ¦β75Jul 16, 2026Updated last week
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from β¦β11Oct 21, 2020Updated 5 years ago
- β18Jun 3, 2020Updated 6 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipelineβ32Oct 9, 2017Updated 8 years ago
- Ultra-efficient mapping-free structural variation genotyperβ20Jul 28, 2021Updated 4 years ago