AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
☆16Jul 7, 2023Updated 2 years ago
Alternatives and similar repositories for ALPS
Users that are interested in ALPS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28May 8, 2021Updated 5 years ago
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 5 years ago
- Monte Carlo Reference-based Consensus Clustering☆38Mar 14, 2020Updated 6 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 9 months ago
- Mitochondrial Solar Plot☆25Feb 25, 2017Updated 9 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Fork of https://code.google.com/p/ngs-analysis☆17Sep 14, 2013Updated 12 years ago
- Visualize genomic data by Hilbert curve☆44Apr 23, 2026Updated last month
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆17Nov 29, 2018Updated 7 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 3 months ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Static website generator for sciencey people☆30Feb 7, 2024Updated 2 years ago
- DiagnoSys is a comprehensive web application that provides advanced detection and analysis for various health conditions. This project le…☆14May 6, 2024Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17May 10, 2026Updated last week
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jan 14, 2026Updated 4 months ago
- Library to visualize protein sequence features in Typescript using D3. This repository is based on calipho-sib/feature-viewer.☆24Feb 4, 2023Updated 3 years ago
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing☆14May 22, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆197Sep 22, 2020Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆29Oct 11, 2025Updated 7 months ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- ☆41Apr 16, 2018Updated 8 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75May 14, 2026Updated last week
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- ☆18Jun 3, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- ☆24Aug 20, 2018Updated 7 years ago
- interactive Multi Objective K-mer Analysis☆24Mar 5, 2023Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 3 months ago