rjdkmr / gcMapExplorer
Genome Contact Map Explorer - gcMapExplorer. Visit:
☆21Updated 3 years ago
Alternatives and similar repositories for gcMapExplorer:
Users that are interested in gcMapExplorer are comparing it to the libraries listed below
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 4 months ago
- Processing and plotting tools for genomics data☆20Updated 2 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆35Updated 5 years ago
- Genomic Association Tester☆30Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated 2 months ago
- processing 10x genomics reads☆24Updated 5 years ago
- ☆11Updated 9 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- ☆20Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 10 months ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆33Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- ☆21Updated last month
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- new repo☆27Updated 3 years ago