rjdkmr / gcMapExplorerLinks
Genome Contact Map Explorer - gcMapExplorer. Visit:
☆21Updated 3 years ago
Alternatives and similar repositories for gcMapExplorer
Users that are interested in gcMapExplorer are comparing it to the libraries listed below
Sorting:
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- ☆38Updated 2 years ago
- ☆23Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated this week
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Processing and plotting tools for genomics data☆21Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 10 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- processing 10x genomics reads☆26Updated 6 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- ☆37Updated 6 years ago
- ☆34Updated 2 years ago
- GEM-Mapper v3☆58Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- Genomic Association Tester☆35Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆39Updated this week
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Updated 11 months ago