rjdkmr / gcMapExplorerLinks
Genome Contact Map Explorer - gcMapExplorer. Visit:
☆21Updated 3 years ago
Alternatives and similar repositories for gcMapExplorer
Users that are interested in gcMapExplorer are comparing it to the libraries listed below
Sorting:
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 10 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- ☆36Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- processing 10x genomics reads☆26Updated 5 years ago
- ☆33Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Processing and plotting tools for genomics data☆21Updated 2 weeks ago
- A software for calculating telomere length☆70Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- ☆36Updated 5 years ago
- GEM-Mapper v3☆58Updated 4 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆13Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆47Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated this week
- ☆12Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 9 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆29Updated 3 months ago