rjdkmr / gcMapExplorer
Genome Contact Map Explorer - gcMapExplorer. Visit:
☆21Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for gcMapExplorer
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆35Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- ☆11Updated 6 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- new repo☆27Updated 3 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- ☆33Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated this week
- Immuological gene typing and annotation for genome assembly☆31Updated last month
- Processing and plotting tools for genomics data☆20Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Genomic Association Tester☆29Updated last year
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- Evolutionary Transcriptomics with R☆41Updated this week
- for visual evaluation of read support for structural variation☆50Updated 5 months ago