Alternatives and similar repositories for gcMapExplorer

Users that are interested in gcMapExplorer are comparing it to the libraries listed below

• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated last year
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆48Updated 3 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆44Updated 3 years ago
• yezhengSTAT / mHiC
  ☆23Updated 5 years ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated this week
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆49Updated 6 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year
• ucdavis-bioinformatics / proc10xG
  processing 10x genomics reads
  ☆26Updated 6 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆34Updated 2 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• zd1 / telseq
  A software for calculating telomere length
  ☆72Updated 7 years ago
• nanoporetech / Pore-C-Snakemake
  ☆34Updated 2 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• kingsfordgroup / armatus
  ☆29Updated 7 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 8 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 7 months ago
• ysora / stripenn
  Architectural stripe detection from 3D genome conformation data
  ☆18Updated 2 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 10 years ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆69Updated this week
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆35Updated 6 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated last year
• hiclib / pastis
  Poisson-based algorithm for stable inference of DNA Structure
  ☆39Updated this week
• agalitsyna / avTAD
  Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
  ☆10Updated 4 years ago