YaqiangCao / cLoopsLinks
Accurate and flexible loops calling tool for 3D genomic data.
☆114Updated 3 years ago
Alternatives and similar repositories for cLoops
Users that are interested in cLoops are comparing it to the libraries listed below
Sorting:
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Publication quality NGS track plotting☆116Updated 2 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆119Updated last month
- FAN-C: Framework for the ANalysis of C-like data☆120Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Updated last year
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Updated last year
- Genome-wide contact analysis using sklearn☆71Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Package for analysis and characterization of differential TADs☆26Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- ☆53Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- ☆81Updated 7 months ago
- ☆72Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- ☆120Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆66Updated last year