soyashinkai / PHi-C

Related projects ⓘ

Alternatives and complementary repositories for PHi-C

• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆42Updated last year
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated last year
• b2jia / jie
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 4 years ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• nvictus / lavaburst
  Chromatin domains bursting with flavor
  ☆12Updated 4 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆24Updated this week
• paulsengroup / hictkpy
  Python bindings for hictk: read and write .cool and .hic files directly from Python
  ☆13Updated this week
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆24Updated 3 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆24Updated 3 years ago
• lciernik / ANS_signature_scoring
  A gene expression signature scoring Python package.
  ☆10Updated last year
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• cole-trapnell-lab / worm-rna
  The C. elegans transcriptome at single cell resolution
  ☆11Updated 6 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated 2 months ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆17Updated last year
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• marcovito / sma
  ☆12Updated last year
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 3 years ago
• greenelab / ccc
  ☆21Updated last month
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 2 months ago
• Roy-lab / grinch
  GRiNCH: Graph-Regularized NMF and Clustering for Hi-C
  ☆9Updated 8 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated 10 months ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 5 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆38Updated 2 years ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆18Updated 5 months ago