Tools for processing HIC data.
☆11May 21, 2021Updated 5 years ago
Alternatives and similar repositories for hictools
Users that are interested in hictools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- 生物信息学的画图代码☆12Apr 11, 2023Updated 3 years ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆11Aug 12, 2020Updated 5 years ago
- GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure☆24Feb 21, 2019Updated 7 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Nov 11, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genome browser to visualize and analyze genomic data☆14Nov 22, 2021Updated 4 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Discovery of communities in Pore-C concatemers☆16Feb 12, 2025Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆20Dec 18, 2022Updated 3 years ago
- Package for analysis and characterization of differential TADs☆27Updated this week
- ☆25May 14, 2021Updated 5 years ago
- A distributed application framework for large-scale data management and AI model serving☆24Jul 14, 2026Updated last week
- A JBrowse plugin for viewing GWAS data☆13Feb 13, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆14Jul 1, 2025Updated last year
- Dataflow based workflow framework☆41May 15, 2021Updated 5 years ago
- ☆22Apr 2, 2015Updated 11 years ago
- CIKM2022: source code for "hypergraph learning with line expansion" paper☆19May 19, 2023Updated 3 years ago
- A deep convolutional neural network for the accurate prediction of silencers☆16May 23, 2023Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆22Jan 23, 2022Updated 4 years ago
- ☆22May 26, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- A Python script to crosspost Ghost articles to Medium. Written for Zapier.☆11May 22, 2020Updated 6 years ago
- Python Wrapper around Ollama API Endpoints☆12Jan 26, 2024Updated 2 years ago
- MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks.☆22Aug 19, 2022Updated 3 years ago
- STARRPeaker: STARR-seq peak caller☆17Jul 6, 2022Updated 4 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Legend made easy for matplotlib☆36Jun 13, 2026Updated last month
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analyze and organize your gmail inbox from your command line to achieve the coveted inbox zero☆13Nov 23, 2022Updated 3 years ago
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆77Jun 24, 2026Updated 3 weeks ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆17Mar 27, 2018Updated 8 years ago
- Generate malicious files using recently published homoglyphic-attack (CVE-2021-42694)☆18May 2, 2026Updated 2 months ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- Fabric 官方文档的中文版翻译☆16Jun 25, 2014Updated 12 years ago