zqbake / hictoolsLinks
Tools for processing HIC data.
☆11Updated 4 years ago
Alternatives and similar repositories for hictools
Users that are interested in hictools are comparing it to the libraries listed below
Sorting:
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- Genome-wide contact analysis using sklearn☆72Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 4 months ago
- Tools for DLO HiC data analyze☆16Updated 3 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Updated last year
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- SIP: Significant Interaction Peak caller☆15Updated 9 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Updated 4 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Python bindings to UCSC BigWig and BigBed library☆35Updated last week
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated 2 years ago
- Legend made easy for matplotlib☆31Updated 8 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 3 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 10 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 6 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 10 months ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- ☆30Updated last year
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 weeks ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago