vaquerizaslab / fanc
FAN-C: Framework for the ANalysis of C-like data
☆112Updated last year
Alternatives and similar repositories for fanc:
Users that are interested in fanc are comparing it to the libraries listed below
- A modular Hi-C mapping pipeline☆94Updated 5 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 5 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆246Updated 5 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆85Updated 2 years ago
- The tools for your .cool's☆150Updated 6 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆112Updated 3 months ago
- ☆131Updated 6 years ago
- HiC uniform processing pipeline☆59Updated last year
- Basic workflow for ATAC-seq analysis☆77Updated last year
- Lightweight converter between hic and cool contact matrices.☆71Updated 9 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆91Updated this week
- Quantification of transposable element expression using RNA-seq☆68Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆64Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆79Updated 6 months ago
- Generate IGV style locus tracks from bigWig files in R☆158Updated 6 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆71Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆59Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆77Updated 6 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- ☆105Updated last year