Alternatives and similar repositories for swDMR

Users that are interested in swDMR are comparing it to the libraries listed below

• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 7 years ago
• carringtonlab / TargetFinder
  Plant small RNA target prediction tool
  ☆26Updated 8 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆43Updated 7 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 3 years ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 3 weeks ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 7 years ago
• Uauy-Lab / WheatHomoeologExpression
  ☆15Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• tao-bioinfo / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆21Updated 6 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 5 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated last month
• ajmazurie / kegg-animate-pathway
  Command-line utility to color objects of a KEGG pathway with arbitrary colors
  ☆33Updated 9 years ago
• orzechoj / circRNA_finder
  Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
  ☆16Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 5 months ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• lh3 / lianti
  Tools to process LIANTI sequence data
  ☆23Updated 6 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆45Updated 2 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• ZhouQiangwei / MethHaplo
  allele specific DNA methylation haplotype region
  ☆14Updated last year
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• nf-core / lncpipe
  UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
  ☆34Updated 2 months ago