Alternatives and similar repositories for Metagenome-illumina-sequencing-pipeline:

Users that are interested in Metagenome-illumina-sequencing-pipeline are comparing it to the libraries listed below

• gaospecial / ccgraph
  ☆11Updated 5 years ago
• jmzeng1314 / IDmap
  ☆11Updated 6 years ago
• jmzeng1314 / TF_map
  ☆12Updated 4 years ago
• greenelab / gbm_immune_validation
  Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
  ☆14Updated 5 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• ShixiangWang / gcap
  GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…
  ☆18Updated 3 months ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• Bioinformatics-rookie / WGCNA
  ☆14Updated 3 years ago
• rli012 / BioinfoHub
  ☆12Updated 2 years ago
• zhangjunpeng411 / LncmiRSRN
  LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network
  ☆13Updated 3 years ago
• fswfsw / ScRNA-smartseq2
  单细胞转录组实战
  ☆14Updated 5 years ago
• openbiox / Awesome-Bioinformatics-Workflow-Chinese
  Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目
  ☆27Updated 5 years ago
• jmzeng1314 / my-perl
  some short but practical PERL script in NGS data analysis
  ☆16Updated 7 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆31Updated 3 years ago
• nongxinshengxin / RNAdiffAPP
  ☆17Updated last year
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• paulgeeleher / pRRophetic
  R package
  ☆22Updated last year
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 3 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• maglab / Age-associated_cancer_genome
  ☆13Updated 4 years ago
• farkkilab / scarHRD
  Package for calculation of Homologous Recombination Deficiency
  ☆13Updated 5 years ago
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆18Updated 5 years ago
• PSSUN / CircCode
  A Python3-base pipeline for translated circular RNA(circRNA) identification
  ☆16Updated 2 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆10Updated 6 years ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• HuaZou / bioinformatics_pipeline
  Bioinformatics Pipeline
  ☆13Updated 2 years ago
• Sidra-TBI-FCO / ISPC
  Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)
  ☆10Updated 4 years ago