waldronlab / SingleCellMultiModalLinks
Single Cell multimodal data scripts for downloading datasets
☆17Updated 2 weeks ago
Alternatives and similar repositories for SingleCellMultiModal
Users that are interested in SingleCellMultiModal are comparing it to the libraries listed below
Sorting:
- R package for benchmarking single cell analysis methods☆31Updated last year
- Gene-level general linear mixed model☆22Updated 5 months ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- ☆12Updated last year
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated this week
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Core utilities for single-cell RNA-seq☆12Updated 2 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- ☆24Updated 3 weeks ago
- Toolbox package for organizing and working with TCGA data☆28Updated 2 weeks ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 11 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated last year
- Differential Correlation across Ranked Samples☆12Updated 2 years ago