dzerbino / ascii_plots
Convenience function for quick and dirty data analysis
☆68Updated 7 years ago
Alternatives and similar repositories for ascii_plots:
Users that are interested in ascii_plots are comparing it to the libraries listed below
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- Simple tool to verticalize text delimited files.☆36Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- C++ wrapper to tabix indexer☆17Updated this week
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 5 months ago
- mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org☆75Updated last month
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Flexible omics pipeline☆18Updated 9 months ago
- python stuff I use☆19Updated 5 years ago
- Simple tokenised template system for SGE☆10Updated 2 years ago
- Write-once-read-many table for large datasets.☆27Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- reference free variant assembly☆33Updated last year
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆9Updated 4 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- IPython notebooks to teach Genomics and Population Genetics☆21Updated 8 years ago
- a python library for working with flow cytometry data.☆14Updated 10 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Updated 10 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Updated 9 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Updated 7 years ago
- forward-time population genetic simulation in python☆18Updated 8 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Updated 6 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Updated 9 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago