zhangjiajie / PTPLinks
PTP model for species delimitation
☆20Updated 6 years ago
Alternatives and similar repositories for PTP
Users that are interested in PTP are comparing it to the libraries listed below
Sorting:
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆69Updated 4 years ago
- mPTP - a tool for single-locus species delimitation☆29Updated 2 years ago
- Reconstruct Ancestral State in Phylogenies☆26Updated last year
- Python version of PHLAWD☆21Updated last year
- A program for multimodel inference on speciation and trait evolution☆34Updated 8 years ago
- Phylogenetic penalized likelihood☆53Updated 4 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆43Updated last year
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 5 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Updated 3 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Updated 9 months ago
- ☆19Updated 2 months ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 5 months ago
- ☆21Updated 2 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 3 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- A tool to root phylogenies☆22Updated last year
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Updated 4 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆21Updated 11 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 4 years ago
- spruceup☆25Updated 2 months ago
- Clann: constructing consensus trees and supertrees from multiple source trees☆17Updated 7 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Updated 3 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Updated 2 weeks ago
- Sequence simulator☆54Updated 8 months ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆71Updated last week