zhangjiajie / PTP
PTP model for species delimitation
☆20Updated 5 years ago
Alternatives and similar repositories for PTP:
Users that are interested in PTP are comparing it to the libraries listed below
- mPTP - a tool for single-locus species delimitation☆26Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated this week
- Python version of PHLAWD☆21Updated 2 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆65Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- A program for multimodel inference on speciation and trait evolution☆33Updated 7 years ago
- ☆20Updated last year
- Phylogenetic penalized likelihood☆47Updated 5 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆27Updated 10 months ago
- ☆38Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆18Updated this week
- spruceup☆24Updated 4 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆15Updated 2 years ago
- Reconstruct Ancestral State in Phylogenies☆17Updated 7 months ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated last year
- Tutorial on Bayesian phylogenetic analysis☆45Updated 7 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆55Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆29Updated 2 weeks ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆46Updated 10 months ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated last year
- eDNA metabarcoding pipeline☆31Updated last month
- ☆26Updated 3 years ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆18Updated 3 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago