cbare / vcf2maf
Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
☆13Updated 8 years ago
Related projects: ⓘ
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 8 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago
- Clonal reconstruction from HTS data☆10Updated 2 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 4 years ago
- stageR package☆11Updated last year
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆9Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 5 years ago
- Mean Alterations Using Discrete Expression☆13Updated 5 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Easily run WDL workflows on GCP☆13Updated 2 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated 7 months ago
- ☆17Updated 4 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆12Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆24Updated 4 years ago
- BLENDER is a companion program to the DISCOVER-Seq assay to identify off-target editing sites from MRE11 ChIP-Seq experiments.☆16Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Differential Mutation Analysis☆11Updated 4 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆12Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆26Updated last month
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago