cbare / vcf2mafLinks
Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
☆15Updated 9 years ago
Alternatives and similar repositories for vcf2maf
Users that are interested in vcf2maf are comparing it to the libraries listed below
Sorting:
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Clonal reconstruction from HTS data☆10Updated 4 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Updated 3 months ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆26Updated 5 years ago
- DTU analysis tool inspired by llamas☆12Updated 4 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆25Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Public repository for building and analyzing protein complex maps☆11Updated 9 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago