brentp / peddyLinks
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
☆141Updated last month
Alternatives and similar repositories for peddy
Users that are interested in peddy are comparing it to the libraries listed below
Sorting:
- ☆123Updated last month
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- VCF-kit: Assorted utilities for the variant call format☆130Updated last month
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Structural variation and indel detection by local assembly☆247Updated this week
- VarDict☆198Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated last month
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆128Updated 2 years ago
- The nimble & robust variant annotator☆184Updated last year
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆167Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- ☆82Updated 6 years ago
- Learning the Variant Call Format☆144Updated 3 weeks ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 3 weeks ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆142Updated 7 years ago
- NEAT read simulation tools☆98Updated 3 years ago