brentp / peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
☆136Updated 3 years ago
Alternatives and similar repositories for peddy:
Users that are interested in peddy are comparing it to the libraries listed below
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆158Updated 7 months ago
- VarDict☆194Updated last year
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Structural variation and indel detection by local assembly☆244Updated 2 weeks ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- VCF-kit: Assorted utilities for the variant call format☆128Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated last year
- ASCAT R package☆176Updated last week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆96Updated last month
- ABRA2☆92Updated 2 years ago
- Annotation and Ranking of Structural Variation☆248Updated 2 weeks ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆144Updated last week
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 3 weeks ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- BAM Statistics, Feature Counting and Annotation☆147Updated last month
- RNA-seq analysis pipeline for detection of gene-fusions☆150Updated this week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- Bayesian genotyper for structural variants☆128Updated 4 years ago
- BEDOPS: high-performance genomic feature operations☆319Updated last year
- Software program for checking sample matching for NGS data☆129Updated 9 months ago
- ☆119Updated 4 months ago