brentp / peddyLinks
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
☆137Updated 4 years ago
Alternatives and similar repositories for peddy
Users that are interested in peddy are comparing it to the libraries listed below
Sorting:
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- VarDict☆200Updated last year
- ☆120Updated 6 months ago
- Annotation and Ranking of Structural Variation☆258Updated 3 months ago
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- VCF-kit: Assorted utilities for the variant call format☆130Updated last month
- phasing and Allele Specific Expression from RNA-seq☆115Updated 10 months ago
- Microassembly based somatic variant caller for NGS data☆153Updated 2 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated 2 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆148Updated last week
- ABRA2☆92Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 9 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- An efficient FASTQ manipulation suite☆137Updated 5 years ago
- TransVar - multiway annotator for precision medicine☆125Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆188Updated last week
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated this week
- Copy number calling and variant classification using targeted short read sequencing☆134Updated last month
- Software program for checking sample matching for NGS data☆132Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Tools to work with GWAS-VCF summary statistics files☆119Updated 8 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago